An FM-index Based High-Throughput Memory-Efficient FPGA Accelerator for Paired-end Short-read Mapping

Keyphrases

• Memory Efficiency 100%
• High-throughput 100%
• Index-based 100%
• Paired-end 100%
• FPGA Acceleration 100%
• Short-read Mapping 100%
• Memory Access 66%
• Memory Overhead 66%
• Computation Time 33%
• Memory Operations 33%
• Execution Time 33%
• Hardware Accelerator 33%
• Processing Time 33%
• FPGA Design 33%
• Mapping Process 33%
• Early Termination 33%
• Xilinx 33%
• Data Locality 33%
• DRAM Access 33%
• Short Reads 33%
• U.S. Food 33%
• Alignment Score 33%
• Alveo 33%
• Candidate Filtering 33%

Computer Science

• High Throughput 100%
• Field Programmable Gate Arrays 100%
• Memory Access 50%
• Data Structure 25%
• Table Lookup 25%
• Execution Time 25%
• Processing Time 25%
• Hardware Accelerator 25%
• Computation Time 25%
• Mapping Process 25%
• Data Locality 25%
• Memory Operation 25%
• Alignment Score 25%