Jui-Hung Hung

2023

MiR34 contributes to spinal muscular atrophy and AAV9-mediated delivery of MiR34a ameliorates the motor deficits in SMA mice

Chen, T. H., Chang, S. H., Wu, Y. F., Yen, Y. P., Hsu, F. Y., Chen, Y. C., Ming, Y., Hsu, H. C., Su, Y. C., Wong, S. T., Hung, J. H., Chiou, S. H., Jong, Y. J. & Chen, J. A., 13 6月 2023, 於: Molecular Therapy - Nucleic Acids. 32, p. 144-160 17 p.

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1 引文斯高帕斯（Scopus）

2022

Estimating intraclonal heterogeneity and subpopulation changes from bulk expression profiles in CMap

Hsieh, C. Y., Tu, C. C. & Hung, J. H., 10月 2022, 於: Life Science Alliance. 5, 10, e202101299.

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2 引文斯高帕斯（Scopus）

2021

A 975-mW Fully Integrated Genetic Variant Discovery System-on-Chip in 28 nm for Next-Generation Sequencing

Wu, Y. C., Chen, Y. L., Yang, C. H., Lee, C. H., Yu, C. Y., Chang, N. S., Chen, L. C., Chang, J. R., Lin, C. P., Chen, H. L., Chen, C. S., Hung, J. H. & Yang, C. H., 1月 2021, 於: IEEE Journal of Solid-State Circuits. 56, 1, p. 123-135 13 p., 9239376.

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2 引文斯高帕斯（Scopus）

EARRINGS: An efficient and accurate adapter trimmer entails no a priori adapter sequences

Wang, T. H., Huang, C. C. & Hung, J. H., 1 7月 2021, 於: Bioinformatics. 37, 13, p. 1846-1852 7 p.

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3 引文斯高帕斯（Scopus）

2020

Epigenetic regulation of WNT3A enhancer during regeneration of injured cortical neurons

Chang, C. Y., Hung, J. H., Huang, L. W., Li, J., Fung, K. S., Kao, C. F. & Chen, L., 10 3月 2020, 於: International journal of molecular sciences. 21, 5, 16 p., 1891.

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3 引文斯高帕斯（Scopus）

2019

Ash2l interacts with Oct4-stemness circuitry to promote super-enhancer-driven pluripotency network

Tsai, P. H., Chien, Y., Wang, M. L., Hsu, C. H., Laurent, B., Chou, S. J., Chang, W. C., Chien, C. S., Li, H. Y., Lee, H. C., Huo, T. I., Hung, J-H., Chen, C. H. & Chiou, S. H., 4 11月 2019, 於: Nucleic acids research. 47, 19, p. 10115-10133 19 p.

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18 引文斯高帕斯（Scopus）

2018

Dlk1-Dio3 locus-derived lncRNAs perpetuate postmitotic motor neuron cell fate and subtype identity

Yen, Y. P., Hsieh, W. F., Tsai, Y. Y., Lu, Y. L., Liau, E. S., Hsu, H. C., Chen, Y. C., Liu, T. C., Chang, M., Li, J., Lin, S. P., Hung, J-H. & Chen, J. A., 12 10月 2018, 於: eLife. 7, e38080.

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36 引文斯高帕斯（Scopus）

2017

A 135-mW Fully Integrated Data Processor for Next-Generation Sequencing

Wu, Y. C., Chang, C. H., Hung, J-H. & Yang, C. H., 1 12月 2017, 於: IEEE Transactions on Biomedical Circuits and Systems. 11, 6, p. 1216-1225 10 p., 8094922.

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16 引文斯高帕斯（Scopus）

Analysis of microarray and RNA-seq expression profiling data

Hung, J-H. & Weng, Z., 1 3月 2017, 於: Cold Spring Harbor Protocols. 2017, 3, p. 191-196 6 p.

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29 引文斯高帕斯（Scopus）

Analyzing microarray data

Hung, J-H. & Weng, Z., 1 3月 2017, 於: Cold Spring Harbor Protocols. 2017, 3, p. 244-253 10 p.

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6 引文斯高帕斯（Scopus）

Discovering cis-regulatory motifs

Hung, J-H. & Weng, Z., 1 2月 2017, 於: Cold Spring Harbor Protocols. 2017, 2, p. 173-181 9 p.

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3 引文斯高帕斯（Scopus）

Identifying regions enriched in a chip-seq data set (Peak finding)

Hung, J-H. & Weng, Z., 1 2月 2017, 於: Cold Spring Harbor Protocols. 2017, 2, p. 165-172 8 p.

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5 引文斯高帕斯（Scopus）

Mapping billions of short reads to a reference genome

Hung, J-H. & Weng, Z., 1 1月 2017, 於: Cold Spring Harbor Protocols. 2017, 1, p. 14-17 4 p.

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3 引文斯高帕斯（Scopus）

Mapping short sequence reads to a reference genome

Hung, J-H. & Weng, Z., 1 2月 2017, 於: Cold Spring Harbor Protocols. 2017, 2, p. 158-164 7 p.

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9 引文斯高帕斯（Scopus）

Peak-finding algorithms

Hung, J-H. & Weng, Z., 1 3月 2017, 於: Cold Spring Harbor Protocols. 2017, 3, p. 197-203 7 p.

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2016

Data formats in bioinformatics

Hung, J-H. & Weng, Z., 1 8月 2016, 於: Cold Spring Harbor Protocols. 2016, 8, p. 669-671 3 p.

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9 引文斯高帕斯（Scopus）

Designing polymerase chain reaction primers using Primer3Plus

Hung, J-H. & Weng, Z., 1 9月 2016, 於: Cold Spring Harbor Protocols. 2016, 9, p. 821-826 6 p.

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12 引文斯高帕斯（Scopus）

SBWT: Memory efficient implementation of the hardware-acceleration-friendly Schindler transform for the fast biological sequence mapping

Chang, C. H., Chou, M. T., Wu, Y. C., Hong, T. W., Li, Y. L., Yang, C. H. & Hung, J-H., 15 11月 2016, 於: Bioinformatics. 32, 22, p. 3498-3500 3 p.

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8 引文斯高帕斯（Scopus）

Sequence alignment and homology search

Hung, J-H. & Weng, Z., 1 11月 2016, 於: Cold Spring Harbor Protocols. 2016, 11, p. 937-940 4 p.

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6 引文斯高帕斯（Scopus）

Sequence alignment and homology search with BLAST and ClustalW

Hung, J-H. & Weng, Z., 1 11月 2016, 於: Cold Spring Harbor Protocols. 2016, 11, p. 1016-1021 6 p.

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67 引文斯高帕斯（Scopus）

Visualizing genomic annotations with the UCSC genome browser

Hung, J-H. & Weng, Z., 1 11月 2016, 於: Cold Spring Harbor Protocols. 2016, 11, p. 1006-1015 10 p.

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17 引文斯高帕斯（Scopus）

2015

Mir-17~92 Governs Motor Neuron Subtype Survival by Mediating Nuclear PTEN

Tung, Y. T., Lu, Y. L., Peng, K. C., Yen, Y. P., Chang, M., Li, J., Jung, H., Thams, S., Huang, Y. P., Hung, J-H. & Chen, J. A., 26 5月 2015, 於: Cell Reports. 11, 8, p. 1305-1318 14 p.

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23 引文斯高帕斯（Scopus）

PEAT: An intelligent and efficient paired-end sequencing adapter trimming algorithm

Li, Y. L., Weng, J. C., Hsiao, C. C., Chou, M. T., Tseng, C. W. & Hung, J-H., 21 1月 2015, 於: BMC Bioinformatics. 16, 1, S2.

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40 引文斯高帕斯（Scopus）

Tailor: A computational framework for detecting non-templated tailing of small silencing RNAs

Chou, M. T., Han, B. W., Hsiao, C. P., Zamore, P. D., Weng, Z. & Hung, J-H., 30 9月 2015, 於: Nucleic acids research. 43, 17, e109.

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20 引文斯高帕斯（Scopus）

Uridylation of RNA Hairpins by Tailor Confines the Emergence of MicroRNAs in Drosophila

Reimão-Pinto, M. M., Ignatova, V., Burkard, T. R., Hung, J-H., Manzenreither, R. A., Sowemimo, I., Herzog, V. A., Reichholf, B., Fariña-Lopez, S. & Ameres, S. L., 16 7月 2015, 於: Molecular Cell. 59, 2, p. 203-216 14 p.

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47 引文斯高帕斯（Scopus）

2014

A System for Genome-Wide Histone Variant Dynamics In ES Cells Reveals Dynamic MacroH2A2 Replacement at Promoters

Yildirim, O., Hung, J-H., Cedeno, R. J., Weng, Z., Lengner, C. J. & Rando, O. J., 7 8月 2014, 於: PLoS Genetics. 10, 8, e1004515.

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21 引文斯高帕斯（Scopus）

High-resolution mapping of chromatin packaging in mouse embryonic stem cells and sperm

Carone, B. R., Hung, J-H., Hainer, S. J., Chou, M. T., Carone, D. M., Weng, Z., Fazzio, T. G. & Rando, O. J., 14 7月 2014, 於: Developmental Cell. 30, 1, p. 11-22 12 p.

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174 引文斯高帕斯（Scopus）

2013

A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing

Chou, C. H., Lin, F. M., Chou, M. T., Hsu, S. H. D., Chang, T. H., Weng, S. L., Shrestha, S., Hsiao, C. C., Hung, J-H. & Huang, H. D., 21 1月 2013, 於: BMC Genomics. 14, S2.

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43 引文斯高帕斯（Scopus）

Factorbook.org: A Wiki-based database for transcription factor-binding data generated by the ENCODE consortium

Wang, J., Zhuang, J., Iyer, S., Lin, X. Y., Greven, M. C., Kim, B. H., Moore, J., Pierce, B. G., Dong, X., Virgil, D., Birney, E., Hung, J-H. & Weng, Z., 1 1月 2013, 於: Nucleic acids research. 41, D1

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213 引文斯高帕斯（Scopus）

Hdac6 regulates Tip60-p400 function in stem cells

Chen, P. B., Hung, J-H., Hickman, T. L., Coles, A. H., Carey, J. F., Weng, Z., Chu, F. & Fazzio, T. G., 3 12月 2013, 於: eLife. 2013, 2, e01557.

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44 引文斯高帕斯（Scopus）

2012

Dicer partner proteins tune the length of mature miRNAs in flies and mammals

Fukunaga, R., Han, B. W., Hung, J-H., Xu, J., Weng, Z. & Zamore, P. D., 9 11月 2012, 於: Cell. 151, 3, p. 533-546 14 p.

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148 引文斯高帕斯（Scopus）

Gene set enrichment analysis: Performance evaluation and usage guidelines

Hung, J-H., Yang, T. H., Hu, Z., Weng, Z. & DeLisi, C., 1 5月 2012, 於: Briefings in Bioinformatics. 13, 3, p. 281-291 11 p., bbr049.

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163 引文斯高帕斯（Scopus）

Long-term, efficient inhibition of microRNA function in mice using rAAV vectors

Xie, J., Ameres, S. L., Friedline, R., Hung, J-H., Zhang, Y., Xie, Q., Zhong, L., Su, Q., He, R., Li, M., Li, H., Mu, X., Zhang, H., Broderick, J. A., Kim, J. K., Weng, Z., Flotte, T. R., Zamore, P. D. & Gao, G., 1 4月 2012, 於: Nature Methods. 9, 4, p. 403-409 7 p.

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173 引文斯高帕斯（Scopus）

Using functional signatures to identify repositioned drugs for breast, myelogenous leukemia and prostate cancer

Shigemizu, D., Hu, Z., Hung, J-H., Huang, C. L., Wang, Y. & DeLisi, C., 1 2月 2012, 於: PLoS Computational Biology. 8, 2, e1002347.

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57 引文斯高帕斯（Scopus）

2011

Combinations of newly confirmed Glioma-Associated loci link regions on chromosomes 1 and 9 to increased disease risk

Yang, T. H., Kon, M., Hung, J-H. & Delisi, C., 11 8月 2011, 於: BMC Medical Genomics. 4, 63.

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19 引文斯高帕斯（Scopus）

Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence

Berezikov, E., Robine, N., Samsonova, A., Westholm, J. O., Naqvi, A., Hung, J-H., Okamura, K., Dai, Q., Bortolamiol-Becet, D., Martin, R., Zhao, Y., Zamore, P. D., Hannon, G. J., Marra, M. A., Weng, Z., Perrimon, N. & Lai, E. C., 1 2月 2011, 於: Genome Research. 21, 2, p. 203-215 13 p.

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192 引文斯高帕斯（Scopus）

Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells

Yildirim, O., Li, R., Hung, J-H., Chen, P. B., Dong, X., Ee, L. S., Weng, Z., Rando, O. J. & Fazzio, T. G., 23 12月 2011, 於: Cell. 147, 7, p. 1498-1510 13 p.

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367 引文斯高帕斯（Scopus）

MicroRNA-regulated, systemically delivered rAAV9: A step closer to CNS-restricted transgene expression

Xie, J., Xie, Q., Zhang, H., Ameres, S. L., Hung, J-H., Su, Q., He, R., Mu, X., Seher Ahmed, S., Park, S., Kato, H., Li, C., Mueller, C., Mello, C. C., Weng, Z., Flotte, T. R., Zamore, P. D. & Gao, G., 1 1月 2011, 於: Molecular Therapy. 19, 3, p. 526-535 10 p.

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129 引文斯高帕斯（Scopus）

Target RNA-directed tailing and trimming purifies the sorting of endo-siRNAs between the two Drosophila Argonaute proteins

Ameres, S. L., Hung, J-H., Xu, J., Weng, Z. & Zamore, P. D., 1 1月 2011, 於: RNA. 17, 1, p. 54-63 10 p.

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45 引文斯高帕斯（Scopus）

The 3′-to-5′ exoribonuclease nibbler shapes the 3′ ends of microRNAs bound to drosophila argonaute1

Han, B. W., Hung, J-H., Weng, Z., Zamore, P. D. & Ameres, S. L., 22 11月 2011, 於: Current Biology. 21, 22, p. 1878-1887 10 p.

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123 引文斯高帕斯（Scopus）

2010

Identification of functional modules that correlate with phenotypic difference: The influence of network topology

Hung, J-H., Whitfield, T. W., Yang, T. H., Hu, Z., Weng, Z. & DeLisi, C., 26 2月 2010, 於: Genome Biology. 11, 2, r23.

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69 引文斯高帕斯（Scopus）

Performance of ZDOCK and ZRANK in CAPRI rounds 13-19

Hwang, H., Vreven, T., Pierce, B. G., Hung, J-H. & Weng, Z., 15 11月 2010, 於: Proteins: Structure, Function and Bioinformatics. 78, 15, p. 3104-3110 7 p.

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63 引文斯高帕斯（Scopus）

Target RNA-directed trimming and tailing of small silencing RNAs

Ameres, S. L., Horwich, M. D., Hung, J-H., Xu, J., Ghildiyal, M., Weng, Z. & Zamore, P. D., 18 6月 2010, 於: Science. 328, 5985, p. 1534-1539 6 p.

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436 引文斯高帕斯（Scopus）

2009

VisANT 3.5: Multi-scale network visualization, analysis and inference based on the gene ontology

Hu, Z., Hung, J-H., Wang, Y., Chang, Y. C., Huang, C. L., Huyck, M. & Delisi, C., 4 8月 2009, 於: Nucleic acids research. 37, SUPPL. 2

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163 引文斯高帕斯（Scopus）

2006

dbPTM: an information repository of protein post-translational modification.

Lee, T. Y., Huang, H. D., Hung, J-H., Huang, H. Y., Yang, Y-S. & Wang, T. H., 1 1月 2006, 於: Nucleic acids research. 34, Database issue, p. D622-D627

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201 引文斯高帕斯（Scopus）

ProKware: Integrated software for presenting protein structural properties in protein tertiary structures

Hung, J-H., Huang, H. D. & Lee, T. Y., 1 7月 2006, 於: Nucleic Acids Research. 34, WEB. SERV. ISS.

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2 引文斯高帕斯（Scopus）

洪 瑞鴻

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洪瑞鴻