Latency-optimization synthesis with module selection for digital microfluidic biochips

Chia Hung Liu; Kuang Cheng Liu; Juinn-Dar Huang

doi:10.1109/SOCC.2013.6749681

Latency-optimization synthesis with module selection for digital microfluidic biochips

Chia Hung Liu, Kuang Cheng Liu, Juinn-Dar Huang

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

12 Scopus citations

Abstract

Digital microfluidic biochip (DMFB) is one of the latest developments in bioelectronics. It can replace traditional bulky equipment to facilitate biochemical assays and save the labor cost. Latency optimization is a common optimization objective of synthesis on DMFBs for assay time reduction. It is helpful for latency minimization if an operation can freely select one from a set of functional modules with various area-latency tradeoffs. In this paper, we propose an efficient latency-optimization synthesis algorithm with module selection capability, LOSMOS, for DMFBs. Experimental results show that LOSMOS outperforms several existing state-of-the-art synthesis algorithms and an ILP-based method without module selection.

Original language	English
Title of host publication	Proceedings - IEEE 26th International SOC Conference, SOCC 2013
Publisher	IEEE Computer Society
Pages	159-164
Number of pages	6
ISBN (Print)	9781479911660
DOIs	https://doi.org/10.1109/SOCC.2013.6749681
State	Published - 2013
Event	26th IEEE International System-on-Chip Conference, SOCC 2013 - Erlangen, Germany Duration: 4 Sep 2013 → 6 Sep 2013

Publication series

Name	International System on Chip Conference
ISSN (Print)	2164-1676
ISSN (Electronic)	2164-1706

Conference

Conference	26th IEEE International System-on-Chip Conference, SOCC 2013
Country/Territory	Germany
City	Erlangen
Period	4/09/13 → 6/09/13

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10.1109/SOCC.2013.6749681

Cite this

@inproceedings{f9b93a9263aa440ca2552824ad7cdf3b,

title = "Latency-optimization synthesis with module selection for digital microfluidic biochips",

abstract = "Digital microfluidic biochip (DMFB) is one of the latest developments in bioelectronics. It can replace traditional bulky equipment to facilitate biochemical assays and save the labor cost. Latency optimization is a common optimization objective of synthesis on DMFBs for assay time reduction. It is helpful for latency minimization if an operation can freely select one from a set of functional modules with various area-latency tradeoffs. In this paper, we propose an efficient latency-optimization synthesis algorithm with module selection capability, LOSMOS, for DMFBs. Experimental results show that LOSMOS outperforms several existing state-of-the-art synthesis algorithms and an ILP-based method without module selection.",

author = "Liu, {Chia Hung} and Liu, {Kuang Cheng} and Juinn-Dar Huang",

year = "2013",

doi = "10.1109/SOCC.2013.6749681",

language = "English",

isbn = "9781479911660",

series = "International System on Chip Conference",

publisher = "IEEE Computer Society",

pages = "159--164",

booktitle = "Proceedings - IEEE 26th International SOC Conference, SOCC 2013",

address = "美國",

note = "26th IEEE International System-on-Chip Conference, SOCC 2013 ; Conference date: 04-09-2013 Through 06-09-2013",

}

Liu, CH, Liu, KC & Huang, J-D 2013, Latency-optimization synthesis with module selection for digital microfluidic biochips. in Proceedings - IEEE 26th International SOC Conference, SOCC 2013., 6749681, International System on Chip Conference, IEEE Computer Society, pp. 159-164, 26th IEEE International System-on-Chip Conference, SOCC 2013, Erlangen, Germany, 4/09/13. https://doi.org/10.1109/SOCC.2013.6749681

Latency-optimization synthesis with module selection for digital microfluidic biochips. / Liu, Chia Hung; Liu, Kuang Cheng; Huang, Juinn-Dar.
Proceedings - IEEE 26th International SOC Conference, SOCC 2013. IEEE Computer Society, 2013. p. 159-164 6749681 (International System on Chip Conference).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

TY - GEN

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AU - Liu, Chia Hung

AU - Liu, Kuang Cheng

AU - Huang, Juinn-Dar

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Y1 - 2013

N2 - Digital microfluidic biochip (DMFB) is one of the latest developments in bioelectronics. It can replace traditional bulky equipment to facilitate biochemical assays and save the labor cost. Latency optimization is a common optimization objective of synthesis on DMFBs for assay time reduction. It is helpful for latency minimization if an operation can freely select one from a set of functional modules with various area-latency tradeoffs. In this paper, we propose an efficient latency-optimization synthesis algorithm with module selection capability, LOSMOS, for DMFBs. Experimental results show that LOSMOS outperforms several existing state-of-the-art synthesis algorithms and an ILP-based method without module selection.

AB - Digital microfluidic biochip (DMFB) is one of the latest developments in bioelectronics. It can replace traditional bulky equipment to facilitate biochemical assays and save the labor cost. Latency optimization is a common optimization objective of synthesis on DMFBs for assay time reduction. It is helpful for latency minimization if an operation can freely select one from a set of functional modules with various area-latency tradeoffs. In this paper, we propose an efficient latency-optimization synthesis algorithm with module selection capability, LOSMOS, for DMFBs. Experimental results show that LOSMOS outperforms several existing state-of-the-art synthesis algorithms and an ILP-based method without module selection.

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U2 - 10.1109/SOCC.2013.6749681

DO - 10.1109/SOCC.2013.6749681

M3 - Conference contribution

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SN - 9781479911660

T3 - International System on Chip Conference

SP - 159

EP - 164

BT - Proceedings - IEEE 26th International SOC Conference, SOCC 2013

PB - IEEE Computer Society

T2 - 26th IEEE International System-on-Chip Conference, SOCC 2013

Y2 - 4 September 2013 through 6 September 2013

ER -

Latency-optimization synthesis with module selection for digital microfluidic biochips

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