Identifying regions enriched in a chip-seq data set (Peak finding)

Jui-Hung Hung; Zhiping Weng

doi:10.1101/pdb.prot093187

Identifying regions enriched in a chip-seq data set (Peak finding)

Jui-Hung Hung
, Zhiping Weng

Research output: Contribution to journal › Article › peer-review

6 Scopus citations

Abstract

This protocol demonstrates how to use MACS software to call peaks in a ChIP-seq data set. MACS is one of the most widely used peak-calling programs. The protocol describes how to run MACS in a UNIX environment and on Galaxy and how to extract the sequences of ±50 bp around the summits of the 500 MACS peaks with the most significant P values.

Original language	English
Pages (from-to)	165-172
Number of pages	8
Journal	Cold Spring Harbor Protocols
Volume	2017
Issue number	2
DOIs	https://doi.org/10.1101/pdb.prot093187
State	Published - Feb 2017

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abstract = "This protocol demonstrates how to use MACS software to call peaks in a ChIP-seq data set. MACS is one of the most widely used peak-calling programs. The protocol describes how to run MACS in a UNIX environment and on Galaxy and how to extract the sequences of ±50 bp around the summits of the 500 MACS peaks with the most significant P values.",

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AB - This protocol demonstrates how to use MACS software to call peaks in a ChIP-seq data set. MACS is one of the most widely used peak-calling programs. The protocol describes how to run MACS in a UNIX environment and on Galaxy and how to extract the sequences of ±50 bp around the summits of the 500 MACS peaks with the most significant P values.

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Identifying regions enriched in a chip-seq data set (Peak finding)

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