Calculated based on number of publications stored in Pure and citations from Scopus
Calculated based on number of publications stored in Pure and citations from Scopus
Calculated based on number of publications stored in Pure and citations from Scopus
1996 …2024

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  • 2020

    Configurational Differences and Binding Mechanisms of Interleukin-1 Receptor-Associated Kinase 1

    Chen, Y. T., Wu, C. H., Chen, Y. C., Hsu, Y. C., Huang, Y. W. & Yang, J. M., Oct 2020, Proceedings - IEEE 20th International Conference on Bioinformatics and Bioengineering, BIBE 2020. Institute of Electrical and Electronics Engineers Inc., p. 160-167 8 p. 9288017. (Proceedings - IEEE 20th International Conference on Bioinformatics and Bioengineering, BIBE 2020).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • FooDisNET: A database of food-compound-protein-disease associations

    Lin, C. Y., Lee, J. Y., Huang, S. H., Hsu, Y. C., Hsu, N. Y. & Yang, J. M., Oct 2020, Proceedings - IEEE 20th International Conference on Bioinformatics and Bioengineering, BIBE 2020. Institute of Electrical and Electronics Engineers Inc., p. 190-195 6 p. 9287989. (Proceedings - IEEE 20th International Conference on Bioinformatics and Bioengineering, BIBE 2020).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    6 Scopus citations
  • 2018

    Deep learning with evolutionary and genomic profiles for identifying cancer subtypes

    Lin, C.-Y., Li, R., Akutsu, T., Ruan, P., See, S. & Yang, J.-M., 6 Dec 2018, Proceedings - 2018 IEEE 18th International Conference on Bioinformatics and Bioengineering, BIBE 2018. Institute of Electrical and Electronics Engineers Inc., p. 147-150 4 p. 8567474. (Proceedings - 2018 IEEE 18th International Conference on Bioinformatics and Bioengineering, BIBE 2018).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    2 Scopus citations
  • Identification of the PCa28 gene signature as a predictor in prostate cancer

    Lee, J. Y., Lin, S. Y., Chuang, Y. H., Huang, S. H., Tseng, Y. Y., Yang, J.-M., Lin, C.-Y. & Wang, H. J., 6 Dec 2018, Proceedings - 2018 IEEE 18th International Conference on Bioinformatics and Bioengineering, BIBE 2018. Institute of Electrical and Electronics Engineers Inc., p. 155-158 4 p. 8567476. (Proceedings - 2018 IEEE 18th International Conference on Bioinformatics and Bioengineering, BIBE 2018).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2016

    Finding Influential Genes Using Gene Expression Data and Boolean Models of Metabolic Networks

    Tamura, T., Akutsu, T., Lin, C.-Y. & Yang, J.-M., 16 Dec 2016, Proceedings - 2016 IEEE 16th International Conference on Bioinformatics and Bioengineering, BIBE 2016. Institute of Electrical and Electronics Engineers Inc., p. 57-63 7 p. 7789960. (Proceedings - 2016 IEEE 16th International Conference on Bioinformatics and Bioengineering, BIBE 2016).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    2 Scopus citations
  • 2013

    Rank-based interolog mapping for predicting proteinprotein interactions between genomes

    Lo, Y. S., Chen, C. C., Hsu, K. C. & Yang, J.-M., 1 Jan 2013, 2013 7th International Conference on Systems Biology, ISB 2013. IEEE Computer Society, p. 55-62 8 p. 6623794

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • 2010

    Template-based scoring functions for visualizing biological insights of H-2Kb-peptide-TCR complexes

    Liu, I. H., Lo, Y. S. & Yang, J.-M., 1 Dec 2010, Proceedings - 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2010. p. 127-132 6 p. 5706550. (Proceedings - 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2010).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2009

    3D-interologs: A protein-protein interacting evolution database across multiple species

    Yang, J.-M., Chen, Y. C. & Lo, Y. S., 3 Aug 2009, Proceedings - 2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing, IJCBS 2009. p. 278-285 8 p. 5260668. (Proceedings - 2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing, IJCBS 2009).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • ATRIPPI: An atom-residue preference scoring function for protein-protein interactions

    Liu, K. P., Chang, L. S. & Yang, J.-M., 2009, Proceedings of the 2009 9th IEEE International Conference on Bioinformatics and BioEngineering, BIBE 2009. p. 392-399 8 p. 5211233. (Proceedings of the 2009 9th IEEE International Conference on Bioinformatics and BioEngineering, BIBE 2009).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • GemAffinity: A scoring function for predicting binding affinity and virtual screening

    Hsu, K. C., Chen, Y. F. & Yang, J.-M., 1 Nov 2009, 2009 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2009. p. 309-314 6 p. 5341774. (2009 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2009).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2008

    Binding affinity analysis of protein-ligand complexes

    Hsu, K. C., Chen, Y. F. & Yang, J.-M., 1 Jan 2008, 2nd International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2008. IEEE Computer Society, p. 167-171 5 p. 4534926. (2nd International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2008).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    5 Scopus citations
  • Evolutionary conservation and interacting preference for identifying protein-DNA interactions

    Chang, Y. L., Liu, I. H., Kao, C. Y. & Yang, J.-M., 2008, 3rd International Multi-Symposiums on Computer and Computational Sciences, IMSCCS'08. p. 1-8 8 p. 4760289. (3rd International Multi-Symposiums on Computer and Computational Sciences, IMSCCS'08).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • Identifying critical positions and rules of antigenic drift for influenza A/H3N2 viruses

    Huang, J. W., Chen, C. C. & Yang, J.-M., 1 Jan 2008, 2nd International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2008. IEEE Computer Society, p. 249-252 4 p. 4534945. (2nd International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2008).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2007

    A Gaussian evolutionary method for predicting protein-protein interaction sites

    Liu, K. P. & Yang, J.-M., Apr 2007, Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics - 5th European Conference, EvoBIO 2007, Proceedings. p. 143-154 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4447 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Evolutionary conservation of DNA-contact residues in DNA-binding domains

    Chang, Y. L., Tsai, H. K., Kao, C. Y., Chen, Y. C. & Yang, J.-M., 2007, Proceedings - 2nd International Multi-Symposiums on Computer and Computational Sciences, IMSCCS'07. p. 9-16 8 p. 4392574. (Proceedings - 2nd International Multi-Symposiums on Computer and Computational Sciences, IMSCCS'07).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
  • 2005

    Consensus scoring criteria in structure-based virtual screening

    Yang, J.-M. & Frank Hsu, D., 2005, Emerging Information Technology Conference 2005. p. 165-167 3 p. 1544376. (Emerging Information Technology Conference 2005; vol. 2005).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    5 Scopus citations
  • GEMSCORE: A new empirical energy function for protein folding

    Chiu, Y., Hwang, J. K. & Yang, J.-M., 2005, Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB '05. 1594933. (Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB '05; vol. 2005).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • 2004

    A pharmacophore-based evolutionary approach for screening estrogen receptor antagonists

    Yang, J.-M. & Shen, T. W., 19 Jun 2004, Proceedings of the 2004 Congress on Evolutionary Computation, CEC2004. p. 1028-1035 8 p. (Proceedings of the 2004 Congress on Evolutionary Computation, CEC2004; vol. 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • 2002

    Solving traveling salesman problems by combining global and local search mechanisms

    Tsai, H. K., Yang, J.-M. & Kao, C. Y., 2002, Proceedings of the 2002 Congress on Evolutionary Computation, CEC 2002. IEEE Computer Society, p. 1290-1295 6 p. 1004429. (Proceedings of the 2002 Congress on Evolutionary Computation, CEC 2002; vol. 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    34 Scopus citations
  • 2000

    An evolutionary algorithm for the synthesis of oblique incidence optical coatings

    Yang, J.-M. & Kao, C. Y., 2000, IECON Proceedings (Industrial Electronics Conference). IEEE Computer Society, p. 2780-2785 6 p. 972438. (IECON Proceedings (Industrial Electronics Conference); vol. 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
  • 1998

    An evolutionary algorithm for synthesizing optical thin-film designs

    Yang, J.-M. & Kao, C. Y., 1998, Parallel Problem Solving from Nature, PPSN 1998 - 5th International Conference, Proceedings. Springer Verlag, p. 947-956 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 1498 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    13 Scopus citations
  • A new evolutionary approach to developing neural autonomous agents

    Yang, J.-M., Horng, J. T. & Kao, C. Y., 1998, Proceedings - 1998 IEEE International Conference on Robotics and Automation, ICRA 1998. Institute of Electrical and Electronics Engineers Inc., p. 1411-1416 6 p. 677302. (Proceedings - IEEE International Conference on Robotics and Automation; vol. 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    3 Scopus citations
  • 1997

    Applying family competition to evolution strategies for constrained optimization

    Yang, J.-M., Chen, Y.-P., Horng, J. T. & Kao, C. Y., 1 Jan 1997, Evolutionary Programming VI - 6th International Conference, EP 1997, Proceedings. Angeline, P. J., McDonnell, J. R., Reynolds, R. G. & Eberhart, R. (eds.). Springer Verlag, p. 201-211 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 1213).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    81 Scopus citations
  • 1996

    Evolving neural induction regular language using combined evolutionary algorithms

    Yang, J.-M., Kao, C. Y. & Horng, J. T., 1 Dec 1996, Proceedings ISAI / IFIS 1996 Mexico - USA Collaboration in Intelligent Systems Technologies. Soto, R., Sanchez, J. M., Cantu-Ortiz, F. J. & Campbell, M. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 162-169 8 p. 864114. (Proceedings ISAI / IFIS 1996 Mexico - USA Collaboration in Intelligent Systems Technologies).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    8 Scopus citations